##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index18_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	19210424	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.10771454081388	33.0	31.0	34.0	30.0	34.0
2	32.35595310129542	34.0	31.0	34.0	30.0	34.0
3	32.37142865769126	34.0	31.0	34.0	30.0	34.0
4	36.02875313944138	37.0	35.0	37.0	35.0	37.0
5	35.90787564084999	37.0	35.0	37.0	35.0	37.0
6	35.878092904144125	37.0	35.0	37.0	35.0	37.0
7	35.82315356496036	37.0	35.0	37.0	35.0	37.0
8	35.81733724357151	37.0	35.0	37.0	35.0	37.0
9	37.521065282057286	39.0	37.0	39.0	35.0	39.0
10-14	37.680701571188635	39.2	37.2	39.4	34.2	39.4
15-19	38.73562565823638	40.0	38.0	41.0	34.2	41.0
20-24	38.590702578974835	40.0	38.0	41.0	34.0	41.0
25-29	38.35110449410174	40.0	38.0	41.0	33.8	41.0
30-34	38.03683143068575	40.0	37.4	41.0	33.0	41.0
35-39	37.725605265141475	40.0	37.0	41.0	32.2	41.0
40-44	37.50149424083508	39.6	36.4	41.0	31.8	41.0
45-49	37.0557911163231	39.0	35.4	40.6	31.0	41.0
50-54	36.70720283945842	39.0	35.0	40.4	30.4	41.0
55-59	36.45451051991357	38.2	35.0	40.2	30.6	41.0
60-64	35.739846689484835	36.8	34.0	40.0	30.0	41.0
65-69	34.96495249662371	35.6	34.0	39.0	29.0	41.0
70-74	34.11155541387322	35.0	33.0	37.6	28.6	39.8
75-79	32.9915412590581	34.8	32.4	36.2	27.0	39.0
80-84	32.69412143115634	35.0	33.0	35.4	27.0	37.0
85-89	31.87390232511266	35.0	32.2	35.0	25.6	36.0
90	31.374857108828	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	11.0
12	121.0
13	791.0
14	3462.0
15	8913.0
16	15202.0
17	20501.0
18	25633.0
19	31151.0
20	38282.0
21	45570.0
22	54307.0
23	64623.0
24	81250.0
25	105136.0
26	140907.0
27	186164.0
28	246256.0
29	319395.0
30	406491.0
31	514239.0
32	650412.0
33	838128.0
34	1130622.0
35	1622245.0
36	2509022.0
37	3679964.0
38	4101737.0
39	2313456.0
40	56433.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.28270819580621	12.695348617202376	9.709746563324673	53.31219662366674
2	21.762658648242226	19.103081743536737	36.38201322365399	22.752246384567044
3	25.540519043202792	21.629184238723724	22.503886431658145	30.326410286415335
4	27.803186436697075	27.695645863933038	19.20289734365051	25.298270355719378
5	29.430271814927146	29.70256668983464	21.39093858625921	19.476222908979
6	24.375942977625066	32.5413900286636	21.897699915420922	21.184967078290413
7	21.76821110693504	18.728811794702548	37.122027196280264	22.380949902082147
8	21.515719798792574	21.946829492154883	29.375010150738994	27.16244055831355
9	21.61162039808055	20.854070274140422	31.73555427821703	25.798755049561994
10-14	24.843189227863174	26.028471055291945	24.43125723650627	24.697082480338615
15-19	25.23885415304556	24.979436121630886	24.781393229828204	25.00031649549535
20-24	25.01081044760136	25.21123188795839	25.180607405250825	24.597350259189422
25-29	24.86617430911541	25.192644404230652	25.146719873920397	24.794461412733543
30-34	24.976153972361377	25.093037170235366	25.03659920294711	24.894209654456155
35-39	24.979702872120118	25.25728054176871	24.9873886068218	24.77562797928937
40-44	24.96974974087121	25.05150300528594	25.160554903132333	24.818192350710518
45-49	24.86133656223451	25.123257401329035	25.07655568979465	24.938850346641807
50-54	24.920556837539383	25.20604925250668	25.10722831866869	24.76616559128525
55-59	24.92757213354496	25.129932477422408	25.062676840161085	24.879818548871548
60-64	24.836339519779337	25.150862150189823	25.173750890589076	24.839047439441764
65-69	24.868046552390282	25.250161977590714	25.16439373323165	24.717397736787355
70-74	24.906517077053792	25.181679369030274	25.0648115295775	24.84699202433843
75-79	24.91247462036243	25.117278501190615	25.16410598741124	24.806140891035717
80-84	24.815696244956747	25.260569136958605	25.18344482858181	24.74028978950284
85-89	24.93894482422	25.240528355615094	25.09279176932066	24.72773505084424
90	24.631587320120794	25.350596608059384	25.314490757323867	24.703325314495963
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.59490481947296
2	44.514905032809274
3	55.86692932961813
4	53.10145679241644
5	48.90649472390615
6	45.56091005591548
7	44.14916100901719
8	48.67816035710612
9	47.410375447642544
10-14	49.540271708201786
15-19	50.239170648540906
20-24	49.608160706790784
25-29	49.660635721848955
30-34	49.87036362681753
35-39	49.75533085140949
40-44	49.78794209158173
45-49	49.80018690887631
50-54	49.68672242882463
55-59	49.80739068241651
60-64	49.6753869592211
65-69	49.58544428917764
70-74	49.753509101392225
75-79	49.71861551139815
80-84	49.555986034459586
85-89	49.66667987506425
90	49.33491263461676
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	6.0
1	3.5
2	2.5
3	4.0
4	6.0
5	8.0
6	9.5
7	13.0
8	23.0
9	39.0
10	47.0
11	58.0
12	94.5
13	171.5
14	271.0
15	468.5
16	851.0
17	1474.5
18	2504.5
19	4408.0
20	5672.0
21	7780.5
22	13190.0
23	21509.0
24	32859.0
25	48939.0
26	70524.5
27	97752.0
28	128702.5
29	162325.0
30	180387.0
31	198022.0
32	235049.5
33	276884.5
34	323841.5
35	369109.5
36	413210.0
37	464629.0
38	510086.0
39	546515.0
40	565559.0
41	577070.5
42	602525.5
43	627906.5
44	644034.0
45	649355.5
46	648458.5
47	647610.5
48	651139.0
49	654686.0
50	655385.0
51	648771.0
52	644006.5
53	637949.0
54	635147.0
55	637713.5
56	631169.5
57	621649.5
58	605123.0
59	581621.0
60	569131.0
61	554248.0
62	523025.5
63	485150.5
64	439284.5
65	389778.0
66	338958.5
67	287495.0
68	239926.5
69	194752.5
70	171327.0
71	151133.0
72	114214.5
73	83117.5
74	56360.0
75	35167.0
76	20555.0
77	10956.5
78	5186.5
79	2211.5
80	1212.0
81	865.0
82	369.0
83	170.5
84	91.0
85	50.0
86	33.5
87	18.5
88	10.5
89	8.0
90	4.0
91	4.5
92	3.5
93	1.5
94	0.5
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.40516544559349654
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0023112451864675137
8	0.0
9	0.001780283454441193
10-14	0.0018729414821869626
15-19	2.082202870691454E-4
20-24	0.0015803919788548132
25-29	0.0010994031157250876
30-34	0.001593926297514308
35-39	0.004214378610279503
40-44	0.003493936417020259
45-49	0.0021936007242734467
50-54	0.002741220079265299
55-59	7.20442193259243E-4
60-64	5.476193549918524E-4
65-69	2.633986631424689E-4
70-74	0.005378330014996025
75-79	0.0017636258314756613
80-84	0.002069709653467305
85-89	0.0022008884343208664
90	0.0012545272295916008
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.9210424E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.25804857689743
#Duplication Level	Relative count
1	100.0
2	30.3330425411813
3	15.605275311746292
4	9.600246318058193
5	6.647508595473906
6	4.881202853184174
7	3.694770872889619
8	2.9578693487966334
9	2.4867860625032074
10++	29.058346590034382
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4171395	2.604321	5.3543134	1
CCTGG	4173175	2.592721	5.896252	1
GAAGA	4044925	2.5441167	5.2142386	2
CTTCT	4163065	2.535815	5.8563123	1
AAGAA	4032495	2.5236661	5.1691637	2
CTGGA	3945875	2.4605901	9.171127	1
TCCAG	3818800	2.360737	5.500718	2
CTGCT	3805580	2.3410878	5.249763	1
CTCCT	3789205	2.3108392	7.519524	1
CTGGG	3578225	2.2424982	8.559603	1
CAGGA	3578115	2.242199	5.5491843	1
CTTCA	3611160	2.2104213	6.0509696	1
CTCCA	3540080	2.169495	7.8526974	1
CCCAG	3464280	2.1441295	7.1400847	1
CAGAA	3321030	2.0707333	5.240798	1
CTCTG	3268100	2.0104446	6.6490436	1
CTGGC	3069630	1.9071082	5.5070853	1
TGGAA	2967875	1.8575829	5.324696	2
CTGAA	2970305	1.8430134	5.9497027	1
CTTTT	2973180	1.8088744	5.378684	1
CTCAG	2798060	1.7297277	6.650417	1
CTGAG	2766565	1.7251894	5.1387706	1
CTTTG	2772630	1.7036151	5.4286604	1
CTGGT	2715940	1.685358	5.2915783	1
CTTGG	2629390	1.6316499	5.5841103	1
>>END_MODULE
